Papers

• Mural RV, Sun G, Grzybowski M, Tross MC, Jin H, Smith C, Newton L, Andorf CM, Woodhouse MR, Thompson AM, Sigmon B, Schnable JC (2022) Association Mapping Across a Multitude of Traits Collected in Diverse Environments Identifies Pleiotropic Loci in Maize bioRxiv 2022.02.25.480753 2022 doi: 10.1101/2022.02.25.480753

• Morris D, Shrote R, Tan R, Newton L, Goodwin R, Bunting E, Lipka A, Olsen P, Thompson AM (2022) Modeling canopy architecture traits using UAS-acquired LiDAR features in diverse maize varieties ESSOAr for NAPPN 2022 doi: 10.1002/essoar.10508340.1

• Song G, Han X, Ryner JT, Thompson AM, Wang K (2021) Utilizing MIKC-type MADS-box protein SOC1 for yield potential enhancement in maize Plant Cell Rep doi: 10.1007/s00299-021-02722-4

• Yang KW, Chapman S, Carpenter N, Hammer G, McLean G, Zheng B, Chen Y, Delp E, Masjedi A, Crawford M, Ebert D, Habib A, Thompson AM, Weil C, Tuinstra MR (2021) Integrating Crop Growth Models with Remote Sensing for Predicting Biomass Yield of Sorghum G3 doi: 10.1093/insilicoplants/diab001

• Rogers A et al. (2021) The Importance of Dominance and Genotype-by-Environment Interactions on Grain Yield Variation in a Large-Scale Public Cooperative Maize Experiment G3 doi: 10.1093/g3journal/jkaa050

• Miao C, Guo A, Thompson AM, Yang J, Ge Y, Schnable JC (2021) Automation of leaf counting in maize and sorghum using deep learning The Plant Phenome Journal doi: 10.1002/ppj2.20022

• Raju SKK, Thompson AM, Schnable JC (2020) Advances in plant phenomics: From data and algorithms to biological insights Applications in Plant Sciences doi: 10.1002/aps3.11386

• do Vale Martins L, Yu F, Zhao H, Dennison T, Lauter N, Wang H, Deng Z, Thompson AM, Semrau K, Rouillard JM, Birchler JA, Jiang J (2019) Meiotic crossovers characterized by haplotype-specific chromosome painting in maize Nature Communications doi: 10.1038/s41467-019-12646-z

• Long L, Bassett A, Cichy K, Thompson AM, and Morris D. (2019) Bean split ratio for dry bean canning quality and variety analysis 2019 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops

• van Eeuwijk FA, Bustos-Korts D, Millet EJ, Boer MP, Kruijer W, Thompson AM, Malosetti M, Iwata H, Quiroz R, Kuppe C, Muller O, Blazakis KN, Yu K, Tardieu F, Chapman SC (2019) Modelling strategies for assessing and increasing the effectiveness of new phenotyping techniques in plant breeding Plant Science doi: 10.1016/j.plantsci.2018.06.018

• Yu M, Ramamurthy KN, Thompson AM, Lozano AC (2019) Simultaneous parameter learning and bi-clustering for multi-response models Frontiers in Big Data doi: 10.3389/fdata.2019.00027

• Olsen PA, Ramamurthy KN, Ribera J, Chen Y, Thompson AM, Luss R, Tuinstra M, Abe N (2018) Detecting and counting panicles in sorghum images 2018 IEEE 5th International Conference on Data Science and Advanced Analytics doi: 10.1109/DSAA.2018.00052

• Masjedi A, Zhao J, Thompson AM, Yang KW, Flatt JE, Crawford MM, Ebert DS, Tuinstra MR, Hammer G, Chapman S (2018) Sorghum biomass prediction using UAV-based remote sensing data and crop model simulation 2018 IEEE International Geoscience and Remote Sensing Symposium doi: 10.1109/IGARSS.2018.8519034

• Yu M, Thompson AM, Ramamurthy KN, Yang E, Lazano AC. Multitask learning using task clustering with applications to predictive modeling and GWAS of plant varieties. arXiv arXiv:1710.01788

• Tuinstra MR, Weil C, Thompson AM, Boomsma C, Crawford M, Habib A, Delp E, Cherkauer K, Biehl L, Abe N, Kshirsagar M, Lozano A, Ramamurthy KN, Olsen P, and Yang E. (2016) Automated sorghum phenotyping and trait development platform Proceedings of KDD Workshop on Data Science for Food, Energy, and Water (San Francisco, CA)

• Massafaro M, Thompson AM, Tuinstra M, Dilkes B, Weil CF (2016) Mapping the increased protein digestibility trait in the high-lysine sorghum mutant P721Q Crop Science doi: 10.2135/cropsci2016.03.0188

• Bernardo R, Thompson AM (2016) Germplasm architecture revealed through chromosomal effects for quantitative traits in maize The Plant Genome doi: 10.3835/plantgenome2016.03.0028

• Kelly D, Vatsa A, Mayham W, Ngo L, Thompson AM, Kazic T (2016) An opinion on imaging challenges in phenotyping field crops Machine Vision and Applications doi: 10.1007/s00138-015-0728-4

• Thompson AM, Schnable PS, Yu Jianming Timmermans MCP, Schnable PS, Crants JE, Scanlon MJ, Muehlbauer GJ (2015) Diversity of maize shoot apical meristem architecture and its relationship to plant morphology G3: Genes, Genomes, Genetics doi: 10.1534/g3.115.017541

• Thompson AM, Crants J, Schnable PS, Yu J, Timmermans MCP, Springer NM, Scanlon MJ, Muehlbauer GJ (2014) Genetic control of maize shoot apical meristem architecture G3: Genes, Genomes, Genetics doi: 10.1534/g3.114.011940

• Makarevitch I, Thompson AM, Muehlbauer GJ, Springer NM (2012) Brd1 gene in maize encodes a brassinosteroid C-6 oxidase PLoS One doi: 10.1371/journal.pone.0030798

• Li L. Yu X, Thompson AM, Guo M, Yoshida S, Asami T, Chory J, Yin Y (2009) Arabidopsis MYB30 is a direct target of BES1 and cooperates with BES1 to regulate brassinosteroid-induced gene expression The Plant Journal doi: 10.1111/j.1365-313X.2008.03778.x